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Output from Matlab not received by NI DAQ 6221

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Hello,

I am a student at Aalborg University in Denmark and I am working with a USB 6221 DAQ. My goal is sending a digital square pulse output from Matlab. The problem is that due to the high frequency (1MHz) I need to generate pulses with a width of 200 microseconds in Matlab and send them via DAQ to device 1. I  furthermore have an input signal from device 2 with a sample rate of 1,000 Hz. My problem is that I can't send the square pulses to device 1. I think it is probably because I try to use two frequencies 1MHz (output) and 1,000 Hz (input) simultaneously. 

Can anyone help me?

Thank you in advance


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