DAQ 6008 digital input all registering the same

I am using P0.0 and P0.1 both as digital inputs. However, the P0.0 is deciding the value for all digital inputs (P0.0 though P1.3). I have a second DAQ 6008 hooked up the same way and it is reading the inputs correctly, so I do not believe that the issue is coming from how I have the probes connected. When I disconnect P0.1, the reading will flicker briefly, but then will go back to whatever value P0.0 is. Although possible, I do not believe that there is a short anywhere connecting all digital inputs.